LAMMPS (27 Nov 2018)
  using 1 OpenMP thread(s) per MPI task
# Simple rigid body system

units		lj
atom_style	atomic

pair_style	lj/cut 2.5

read_data	data.rigid
  orthogonal box = (-12 -12 -12) to (12 12 12)
  1 by 1 by 1 MPI processor grid
  reading atoms ...
  81 atoms

velocity 	all create 100.0 4928459

# unconnected bodies

group		clump1 id <> 1 9
9 atoms in group clump1
group		clump2 id <> 10 18
9 atoms in group clump2
group		clump3 id <> 19 27
9 atoms in group clump3
group		clump4 id <> 28 36
9 atoms in group clump4
group		clump5 id <> 37 45
9 atoms in group clump5
group		clump6 id <> 46 54
9 atoms in group clump6
group		clump7 id <> 55 63
9 atoms in group clump7
group		clump8 id <> 64 72
9 atoms in group clump8
group		clump9 id <> 73 81
9 atoms in group clump9

fix 1 all rigid/nve group 9 clump1 clump2 clump3 clump4 clump5 	  	      clump6 clump7 clump8 clump9
9 rigid bodies with 81 atoms

# 1 chain of connected bodies

#group		clump1 id <> 1 9
#group		clump2 id <> 9 18
#group		clump3 id <> 18 27
#group		clump4 id <> 27 36
#group		clump5 id <> 36 45
#group		clump6 id <> 45 54
#group		clump7 id <> 54 63
#group		clump8 id <> 63 72
#group		clump9 id <> 72 81

#fix 1 all poems group clump1 clump2 clump3 clump4 clump5 #	  	      clump6 clump7 clump8 clump9

# 2 chains of connected bodies

#group		clump1 id <> 1 9
#group		clump2 id <> 9 18
#group		clump3 id <> 18 27
#group		clump4 id <> 27 36
#group		clump5 id <> 37 45
#group		clump6 id <> 45 54
#group		clump7 id <> 54 63
#group		clump8 id <> 63 72
#group		clump9 id <> 72 81

#fix 1 all poems group clump1 clump2 clump3 clump4
#fix 2 all poems group clump5 clump6 clump7 clump8 clump9

neigh_modify	exclude group clump1 clump1
neigh_modify	exclude group clump2 clump2
neigh_modify	exclude group clump3 clump3
neigh_modify	exclude group clump4 clump4
neigh_modify	exclude group clump5 clump5
neigh_modify	exclude group clump6 clump6
neigh_modify	exclude group clump7 clump7
neigh_modify	exclude group clump8 clump8
neigh_modify	exclude group clump9 clump9

thermo		100

#dump		1 all atom 50 dump.rigid

#dump		2 all image 100 image.*.jpg type type #		axes yes 0.8 0.02 view 60 -30
#dump_modify	2 pad 5

#dump		3 all movie 100 movie.mpg type type #		axes yes 0.8 0.02 view 60 -30
#dump_modify	3 pad 5

timestep 	0.0001
thermo		50
run		10000
Neighbor list info ...
  update every 1 steps, delay 10 steps, check yes
  max neighbors/atom: 2000, page size: 100000
  master list distance cutoff = 2.8
  ghost atom cutoff = 2.8
  binsize = 1.4, bins = 18 18 18
  1 neighbor lists, perpetual/occasional/extra = 1 0 0
  (1) pair lj/cut, perpetual
      attributes: half, newton on
      pair build: half/bin/atomonly/newton
      stencil: half/bin/3d/newton
      bin: standard
Per MPI rank memory allocation (min/avg/max) = 3.979 | 3.979 | 3.979 Mbytes
Step Temp E_pair E_mol TotEng Press 
       0    115.29439    5235.9179            0    5272.2142   -2.7403788 
      50     14910.69    571.70921            0    5265.8153    32.005816 
     100    16298.128    136.75661            0    5267.6488    16.449029 
     150    16682.532    17.504156            0    5269.4124    14.901186 
     200    16733.906    1.3755079            0    5269.4571    14.571305 
     250    16738.861  -0.15272039            0    5269.4886    14.498342 
     300    16738.608 -0.055216883            0    5269.5066       14.498 
     350      16738.5 -0.017457072            0    5269.5104    14.498392 
     400    16738.451 -0.0060161309            0    5269.5063     14.49851 
     450    16738.435 -0.001271965            0    5269.5059    14.498571 
     500    16738.443 -0.00081074175            0     5269.509    14.498598 
     550    16738.452 -0.00083208965            0    5269.5118    14.498618 
     600     16738.45 -0.00058358431            0    5269.5116    14.498617 
     650    16738.443 -0.00047228525            0    5269.5093      14.4986 
     700    16738.444            0            0    5269.5102    14.498612 
     750    16738.461            0            0    5269.5157    14.498654 
     800    16738.479            0            0     5269.521    14.498697 
     850    16738.473            0            0    5269.5192    14.498683 
     900    16738.449            0            0    5269.5116    14.498624 
     950    16738.438 -0.0035324203            0    5269.5046    14.498537 
    1000    16738.562 -0.051134242            0    5269.4963    14.498093 
    1050    16737.343   0.32970192            0    5269.4934    14.527634 
    1100    16737.878   0.16213235            0    5269.4941    14.533864 
    1150    16738.682 -0.089236256            0    5269.4959    14.511765 
    1200    16738.444 -0.0075446558            0    5269.5025    14.512479 
    1250     16738.45            0            0    5269.5119    14.512611 
    1300    16738.475            0            0    5269.5199    14.512673 
    1350    16738.484            0            0    5269.5228    14.512696 
    1400    16738.469 -0.00044683992            0    5269.5175    14.512651 
    1450     16738.45 -0.0010933363            0     5269.511    14.512595 
    1500    16738.445 -0.00057484239            0      5269.51    14.512591 
    1550    16738.451            0            0    5269.5123    14.512615 
    1600    16738.452            0            0    5269.5127    14.512618 
    1650    16738.443            0            0    5269.5099    14.512596 
    1700    16738.433            0            0    5269.5068    14.512572 
    1750    16738.438            0            0    5269.5084    14.512584 
    1800    16738.459            0            0    5269.5149    14.512635 
    1850    16738.473            0            0    5269.5193     14.51267 
    1900    16738.462            0            0    5269.5159    14.512644 
    1950    16738.446 -0.0032069962            0    5269.5076    14.512539 
    2000    16738.463 -0.013425408            0    5269.5027    14.512382 
    2050    16738.535 -0.036964311            0    5269.5017    14.512152 
    2100    16738.621 -0.063490509            0    5269.5023    14.512108 
    2150    16738.594 -0.056143934            0    5269.5012    14.512117 
    2200    16738.536 -0.038486645            0    5269.5007    14.512277 
    2250    16738.496 -0.023712406            0     5269.503     14.51242 
    2300    16738.488 -0.013209094            0    5269.5109     14.51255 
    2350    16738.486 -0.0045244524            0     5269.519    14.512693 
    2400    16738.475 -0.00051678325            0    5269.5194    14.512743 
    2450    16738.456 -0.0023209272            0    5269.5115    14.512659 
    2500    16738.442 -0.0052101787            0    5269.5042    14.512594 
    2550    16738.552  -0.04420046            0    5269.4998    14.512177 
    2600     16738.42 -0.004347531            0    5269.4982    14.512783 
    2650    16734.241    1.3131302            0       5269.5    14.577195 
    2700    16738.737  -0.10612056            0    5269.4961    14.503874 
    2750    16732.705    1.7939719            0    5269.4974    14.629294 
    2800    16738.558 -0.042867033            0    5269.5032    14.519893 
    2850    16738.499  -0.01271227            0    5269.5146    14.518524 
    2900    16738.486 -0.0032778045            0      5269.52    14.518712 
    2950    16738.482 -0.0089544631            0    5269.5133    14.518629 
    3000    16738.647 -0.070862542            0    5269.5031     14.51803 
    3050    16678.313    18.829038            0     5269.409    15.533426 
    3100    16632.312    33.399217            0    5269.4975    14.588597 
    3150    16739.318  -0.31388148            0    5269.4715    13.520782 
    3200    16727.951      3.26736            0    5269.4741    12.288358 
    3250    16686.364    16.353793            0    5269.4682    14.152517 
    3300    16738.532 -0.031574462            0    5269.5064    13.310615 
    3350    16738.454 -0.0062292918            0    5269.5071    13.308187 
    3400    16738.445 -0.0049349125            0    5269.5055    13.308178 
    3450    16738.489 -0.021623738            0    5269.5026    13.308001 
    3500     16737.78   0.19719043            0    5269.4983    13.325999 
    3550    16658.578    25.116206            0    5269.4834    13.778249 
    3600     16738.51 -0.032864725            0    5269.4981    12.392389 
    3650    16738.899  -0.15952703            0    5269.4938    12.383503 
    3700    16738.879  -0.16025994            0     5269.487    12.382575 
    3750    16738.878  -0.16608251            0    5269.4806    12.382765 
    3800    16738.591 -0.078679341            0    5269.4776    12.383227 
    3850    16738.429 -0.024729409            0    5269.4807    12.382942 
    3900    16738.399 -0.0062729967            0    5269.4897    12.383192 
    3950    16738.428 -0.002521266            0    5269.5027    12.383324 
    4000    16738.467 -0.0002068506            0    5269.5173    12.383474 
    4050    16738.488            0            0    5269.5241    12.383531 
    4100    16738.468            0            0    5269.5178    12.383482 
    4150    16738.422            0            0    5269.5033    12.383369 
    4200    16738.387            0            0    5269.4921    12.383281 
    4250    16738.383            0            0    5269.4908     12.38327 
    4300      16738.4            0            0    5269.4964    12.383314 
    4350    16738.423            0            0    5269.5036     12.38337 
    4400    16738.441            0            0    5269.5092    12.383414 
    4450     16738.45            0            0    5269.5121    12.383437 
    4500     16738.45            0            0    5269.5122    12.383438 
    4550    16738.442            0            0    5269.5095    12.383417 
    4600    16738.425            0            0    5269.5042    12.383376 
    4650    16738.404 -0.0014438316            0    5269.4961    12.383299 
    4700    16738.444 -0.024020551            0    5269.4862    12.382975 
    4750     16738.49  -0.04852143            0    5269.4761    12.385777 
    4800    16735.057    1.0347216            0    5269.4786     12.43543 
    4850    16735.441   0.92650925            0    5269.4913    12.418653 
    4900    16723.839    4.5908974            0    5269.5033    13.410103 
    4950    16738.531  -0.02153767            0    5269.5159    13.089982 
    5000     16738.45 -0.0042589697            0    5269.5077    13.090062 
    5050    16738.409 -0.00024692476            0    5269.4987    13.090038 
    5100    16738.404            0            0    5269.4976    13.090032 
    5150    16738.421            0            0    5269.5029    13.090073 
    5200     16738.44            0            0    5269.5087    13.090119 
    5250    16738.448 -0.001279392            0    5269.5102    13.090114 
    5300    16738.456 -0.0064376391            0    5269.5075    13.090026 
    5350    16738.479 -0.020383841            0    5269.5007    13.089897 
    5400    16735.845    0.7988947            0    5269.4909    13.136244 
    5450    16735.558   0.87620022            0    5269.4778    12.324482 
    5500    16711.494    8.4724178            0    5269.4984    12.656579 
    5550    16454.525    89.074815            0    5269.2031    16.996503 
    5600    16713.084    7.9801418            0    5269.5065    13.774979 
    5650    16738.676 -0.079987748            0    5269.5033    13.168297 
    5700    16446.281    91.866085            0     5269.399    23.764663 
    5750    16738.549 -0.039869084            0    5269.5034    13.378122 
    5800    16738.487 -0.014994478            0    5269.5086    13.378399 
    5850    16738.466 -0.0051267616            0     5269.512     13.37856 
    5900    16738.462 -0.0043690142            0    5269.5113    13.378573 
    5950    16738.528 -0.032727415            0    5269.5039    13.378197 
    6000    16702.774    10.969438            0    5269.2502    13.788852 
    6050    16682.271    17.483137            0    5269.3092    13.353101 
    6100    16738.508 -0.028838222            0    5269.5016    12.521084 
    6150    16738.425 -0.0067595536            0    5269.4974    12.521223 
    6200    16738.401 -0.0011499893            0    5269.4955    12.521254 
    6250    16738.455            0            0    5269.5135     12.52141 
    6300    16738.523            0            0    5269.5352     12.52158 
    6350    16738.503            0            0    5269.5287    12.521531 
    6400    16738.427            0            0    5269.5047    12.521344 
    6450    16738.399            0            0     5269.496    12.521274 
    6500    16738.425            0            0    5269.5042    12.521337 
    6550    16738.441            0            0    5269.5093    12.521378 
    6600     16738.42            0            0    5269.5025    12.521326 
    6650    16738.398            0            0    5269.4957    12.521272 
    6700    16738.435            0            0    5269.5074    12.521362 
    6750    16738.505            0            0    5269.5293    12.521534 
    6800    16738.508            0            0    5269.5303    12.521543 
    6850    16738.446            0            0    5269.5108    12.521391 
    6900    16738.414            0            0    5269.5009    12.521312 
    6950    16738.432            0            0    5269.5063    12.521354 
    7000    16738.444            0            0    5269.5102    12.521385 
    7050    16738.421            0            0    5269.5029    12.521329 
    7100    16738.393            0            0    5269.4941    12.521259 
    7150    16738.419            0            0    5269.5022    12.521322 
    7200    16738.489            0            0    5269.5244    12.521495 
    7250    16738.505            0            0    5269.5293    12.521535 
    7300    16738.443            0            0    5269.5098    12.521383 
    7350    16738.404            0            0    5269.4976    12.521287 
    7400     16738.43            0            0    5269.5058     12.52135 
    7450    16738.461            0            0    5269.5156    12.521427 
    7500    16738.447            0            0    5269.5109    12.521392 
    7550    16738.407            0            0    5269.4986    12.521295 
    7600    16738.412            0            0    5269.5002    12.521306 
    7650    16738.478            0            0    5269.5208    12.521467 
    7700     16738.51            0            0    5269.5309    12.521547 
    7750    16738.454            0            0    5269.5135    12.521412 
    7800    16738.398            0            0    5269.4958    12.521273 
    7850    16738.407 -0.0002118108            0    5269.4982    12.521289 
    7900    16738.441 -0.00021679711            0     5269.509    12.521373 
    7950    16738.446 -0.00023848139            0    5269.5107    12.521386 
    8000    16738.423            0            0    5269.5035    12.521333 
    8050    16738.423            0            0    5269.5034    12.521332 
    8100    16738.478 -0.00069622994            0      5269.52    12.521454 
    8150    16738.523 -0.0040058408            0     5269.531    12.521501 
    8200    16738.486 -0.0092298229            0    5269.5142    12.521334 
    8250    16738.458 -0.023189671            0    5269.4914    12.521014 
    8300    16738.513 -0.045845677            0    5269.4861    12.520779 
    8350    16723.745    4.5690412            0    5269.4516    12.849325 
    8400    16738.466 -0.020158442            0     5269.497    12.835773 
    8450    16738.437 -0.012822892            0    5269.4952    12.829936 
    8500    16738.408 -0.0016837088            0    5269.4972    12.830061 
    8550    16738.464 -0.00097379467            0    5269.5155    12.830216 
    8600    16738.669 -0.050578079            0    5269.5304    12.829934 
    8650    15917.563    250.28318            0    5261.3678     24.54572 
    8700    16738.445 0.0012168759            0    5269.5117    10.589499 
    8750    16738.473 -0.010164589            0     5269.509    10.588414 
    8800    16738.468            0            0    5269.5177    10.588633 
    8850    16738.508            0            0    5269.5304    10.588733 
    8900    16738.509            0            0    5269.5307    10.588736 
    8950    16738.496            0            0    5269.5266    10.588705 
    9000    16738.477            0            0    5269.5204    10.588656 
    9050    16738.455            0            0    5269.5135    10.588602 
    9100    16738.477            0            0    5269.5206    10.588656 
    9150    16738.512            0            0    5269.5316    10.588743 
    9200    16738.502            0            0    5269.5285     10.58872 
    9250    16738.493            0            0    5269.5255    10.588696 
    9300    16738.482            0            0     5269.522    10.588669 
    9350     16738.46            0            0    5269.5151    10.588615 
    9400    16738.481            0            0    5269.5217    10.588665 
    9450    16738.509            0            0    5269.5307    10.588736 
    9500    16738.491            0            0    5269.5248     10.58869 
    9550    16738.484            0            0    5269.5227    10.588674 
    9600    16738.483            0            0    5269.5223    10.588671 
    9650    16738.464            0            0    5269.5166    10.588626 
    9700    16738.484            0            0    5269.5229    10.588674 
    9750    16738.507            0            0    5269.5301    10.588731 
    9800    16738.482            0            0    5269.5221    10.588669 
    9850    16738.478            0            0    5269.5208    10.588659 
    9900    16738.487 -0.00030979474            0    5269.5233    10.588675 
    9950    16738.476 -0.00095968581            0    5269.5193    10.588632 
   10000    16738.494 -0.00062717822            0    5269.5253    10.588684 
Loop time of 0.171181 on 1 procs for 10000 steps with 81 atoms

Performance: 504728.317 tau/day, 58417.629 timesteps/s
97.6% CPU use with 1 MPI tasks x 1 OpenMP threads

MPI task timing breakdown:
Section |  min time  |  avg time  |  max time  |%varavg| %total
---------------------------------------------------------------
Pair    | 0.011004   | 0.011004   | 0.011004   |   0.0 |  6.43
Neigh   | 0.041984   | 0.041984   | 0.041984   |   0.0 | 24.53
Comm    | 0.012262   | 0.012262   | 0.012262   |   0.0 |  7.16
Output  | 0.0017002  | 0.0017002  | 0.0017002  |   0.0 |  0.99
Modify  | 0.098894   | 0.098894   | 0.098894   |   0.0 | 57.77
Other   |            | 0.005337   |            |       |  3.12

Nlocal:    81 ave 81 max 81 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost:    49 ave 49 max 49 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs:    3 ave 3 max 3 min
Histogram: 1 0 0 0 0 0 0 0 0 0

Total # of neighbors = 3
Ave neighs/atom = 0.037037
Neighbor list builds = 998
Dangerous builds = 997
Total wall time: 0:00:00
